A few notes about how I got working fprint in Ubuntu Karmic (since all available HOWTOs treat old versions, other distros or other fingerprint frameworks).
-  Install package libpam-fprint 
-  Run the script “pam_fprint_enroll” and follow instructions 
-  edit the file /etc/pam.d/common-auth, adding the line 
  auth    sufficient                      pam_fprint.so
  # here are the per-package modules (the "Primary" block)
That's it: when you reboot, you should be asked to authenticate via the fingerprint reader (and only if it fails via password).
Notice that:
-  Unfortunately, fingerprint authentication after suspends/screen lock doesn't work (I don't even know if it would with a more advanced configuration). 
-  Unfortunately - but that's not a missing feature, it's just that it couldn't be different - if your password for the account is also used to unlock the gnome keyring, you will have to enter it (when you login with the fingerprint) 
So I personally think that fprint is at the moment quite useless. An exception may be its usage for sudo/gksudo/policykit authentication.